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1

Comparative genomics and functional analysis of the NiaP family uncover nicotinate transporters from bacteria, plants, and mammals

Linda Jeanguenin, Aurora Lara-Núñez, Dmitry A. Rodionov, Andrei L. Osterman, Nataliya Y. Komarova, Doris Rentsch, Jesse F. Gregory, Andrew D. Hanson

Journal:

Functional & Integrative Genomics

Year:

2012

Language:

english

File:

PDF, 449 KB

english, 2012

2

16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics

Peterson, Christine Tara, Sharma, Vandana, Iablokov, Stanislav N., Albayrak, Levent, Khanipov, Kamil, Uchitel, Sasha, Chopra, Deepak, Mills, Paul J., Fofanov, Yuriy, Rodionov, Dmitry A., Peterson, Sco

Journal:

Year:

2019

Language:

english

File:

PDF, 3.46 MB

english, 2019

3

Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria

Rodionov, Dmitry A.

Journal:

Chemical Reviews

Year:

2007

Language:

english

File:

PDF, 1.15 MB

english, 2007

4

EXTENDED STUDY OF LOW-ENERGY INELASTIC MAGNESIUM-HYDROGEN COLLISIONS

RODIONOV DMITRY S.,BELYAEV ANDREY K.,GUITOU MARIE

Journal:

Известия Российского государственного педагогического университета им. А.И. Герцена

Year:

2014

Language:

russian

File:

PDF, 831 KB

russian, 2014

5

Prebiotic Potential of Culinary Spices Used to Support Digestion and Bioabsorption

Peterson, Christine T., Rodionov, Dmitry A., Iablokov, Stanislav N., Pung, Meredith A., Chopra, Deepak, Mills, Paul J., Peterson, Scott N.

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2019

Language:

english

File:

PDF, 2.32 MB

english, 2019

6

Prebiotic Potential of Culinary Spices Used to Support Digestion and Bioabsorption

Peterson, Christine T., Rodionov, Dmitry A., Iablokov, Stanislav N., Pung, Meredith A., Chopra, Deepak, Mills, Paul J., Peterson, Scott N.

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2019

File:

PDF, 2.32 MB

2019

7

Identifying determinants of bacterial fitness in a model of human gut microbial succession

Feng, Lihui, Raman, Arjun S., Hibberd, Matthew C., Cheng, Jiye, Griffin, Nicholas W., Peng, Yangqing, Leyn, Semen A., Rodionov, Dmitry A., Osterman, Andrei L., Gordon, Jeffrey I.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

Language:

english

File:

PDF, 1.12 MB

english, 2020

8

Reproduction of intellectual capital in innovative-digital economy environment

Zhilenkova, Elena, Budanova, Marina, Bulkhov, Nikolay, Rodionov, Dmitry

Journal:

IOP Conference Series Materials Science and Engineering

Year:

2019

File:

PDF, 558 KB

2019

9

A wideband cryogenic microwave low-noise amplifier

Ivanov, Boris I, Volkhin, Dmitri I, Novikov, Ilya L, Pitsun, Dmitri K, Moskalev, Dmitri O, Rodionov, Ilya A, Ilâichev, Evgeni, Vostretsov, Aleksey G

Journal:

Beilstein Journal of Nanotechnology

Year:

2020

File:

PDF, 4.23 MB

2020

10

B Vitamins and Their Role in Immune Regulation and Cancer

Peterson, Christine Tara, Rodionov, Dmitry A., Osterman, Andrei L., Peterson, Scott N.

Journal:

Year:

2020

File:

PDF, 1.66 MB

2020

11

ChemInform Abstract: Conformationally Restricted GABA Analogues: From Rigid Carbocycles to Cage Hydrocarbons

Igor A. Levandovskiy, Dmitry I. Sharapa, Tatyana V. Shamota, Vladimir N. Rodionov, Tatyana E. Shubina

Journal:

Year:

2011

File:

PDF, 18 KB

2011

12

A Eubacterial Riboswitch Class That Senses the Coenzyme Tetrahydrofolate

Tyler D. Ames, Dmitry A. Rodionov, Zasha Weinberg, Ronald R. Breaker

Journal:

Chemistry & Biology

Year:

2010

Language:

english

File:

PDF, 363 KB

english, 2010

13

Comparative genomics and functional annotation of bacterial transporters

Mikhail S. Gelfand, Dmitry A. Rodionov

Journal:

Physics of Life Reviews

Year:

2008

Language:

english

File:

PDF, 1.97 MB

english, 2008

14

Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates and hexonates in gamma purple bacteria

Dmitry A. Rodionov, Andrey A. Mironov, Alexandra B. Rakhmaninova, Mikhail S. Gelfand

Journal:

Molecular Microbiology

Year:

2000

Language:

english

File:

PDF, 775 KB

english, 2000

15

TheRhizobium leguminosarumregulator IrrA affects the transcription of a wide range of genes in response to Fe availability

Jonathan D. Todd, Gary Sawers, Dmitry A. Rodionov, Andrew W. B. Johnston

Journal:

Molecular Genetics and Genomics

Year:

2006

Language:

english

File:

PDF, 450 KB

english, 2006

16

Living without Fur: the subtlety and complexity of iron-responsive gene regulation in the symbiotic bacteriumRhizobiumand other α-proteobacteria

Andrew W. B. Johnston, Jonathan D. Todd, Andrew R. Curson, Sun Lei, Nefeli Nikolaidou-Katsaridou, Mikhail S. Gelfand, Dmitry A. Rodionov

Journal:

Year:

2007

Language:

english

File:

PDF, 268 KB

english, 2007

17

IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli

Jennifer L. Giel, Dmitry Rodionov, Mingzhu Liu, Frederick R. Blattner, Patricia J. Kiley

Journal:

Molecular Microbiology

Year:

2006

Language:

english

File:

PDF, 477 KB

english, 2006

18

Role of a Zn-independent DksA in Zn homeostasis and stringent response

Crysten E. Blaby-Haas, Ran Furman, Dmitry A. Rodionov, Irina Artsimovitch, Valérie de Crécy-Lagard

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 604 KB

english, 2011

19

Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria

Dmitry A Rodionov, Andrey A Mironov, Mikhail S Gelfand

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 309 KB

english, 2001

20

Computational identification of BioR, a transcriptional regulator of biotin metabolism in Alphaproteobacteria, and of its binding signal

Dmitry A. Rodionov, Mikhail S. Gelfand

Journal:

FEMS Microbiology Letters

Year:

2006

Language:

english

File:

PDF, 170 KB

english, 2006

21

Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions

Thomas Eitinger, Dmitry A. Rodionov, Mathias Grote, Erwin Schneider

Journal:

FEMS Microbiology Reviews

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

22

Weak toxin WTX from Naja kaouthia cobra venom interacts with both nicotinic and muscarinic acetylcholine receptors

Dmitry Yu. Mordvintsev, Yakov L. Polyak, Dmitry I. Rodionov, Jan Jakubik, Vladimir Dolezal, Evert Karlsson, Victor I. Tsetlin, Yuri N. Utkin

Journal:

Year:

2009

Language:

english

File:

PDF, 263 KB

english, 2009

23

Behavioural Effects in Mice and Intoxication Symptomatology of Weak Neurotoxin from Cobra Naja kaouthia

Dmitry Y. Mordvintsev, Dmitry I. Rodionov, Mariya V. Makarova, Andrey A. Kamensky, Natalya G. Levitskaya, Alexey Y. Ogay, Dmitry I. Rzhevsky, Arkady N. Murashev, Victor I. Tsetlin, Yuri N. Utkin

Journal:

Basic & Clinical Pharmacology & Toxicology

Year:

2007

Language:

english

File:

PDF, 191 KB

english, 2007

24

Structure and Function of an ADP-Ribose-Dependent Transcriptional Regulator of NAD Metabolism

Nian Huang, Jessica De Ingeniis, Luca Galeazzi, Chiara Mancini, Yuri D. Korostelev, Alexandra B. Rakhmaninova, Mikhail S. Gelfand, Dmitry A. Rodionov, Nadia Raffaelli, Hong Zhang

Journal:

Year:

2009

Language:

english

File:

PDF, 2.11 MB

english, 2009

25

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

Kristine Schauer, Dmitry A. Rodionov, Hilde de Reuse

Journal:

Trends in Biochemical Sciences

Year:

2008

Language:

english

File:

PDF, 978 KB

english, 2008

26

Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling

Dmitry A. Rodionov, Mikhail S. Gelfand

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 182 KB

english, 2005

27

A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life

Crysten E Haas, Dmitry A Rodionov, Janette Kropat, Davin Malasarn, Sabeeha S Merchant, Valérie de Crécy-Lagard

Journal:

Year:

2009

Language:

english

File:

PDF, 2.07 MB

english, 2009

28

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

Yan Zhang, Dmitry A Rodionov, Mikhail S Gelfand, Vadim N Gladyshev

Journal:

Year:

2009

Language:

english

File:

PDF, 558 KB

english, 2009

29

The Zur regulon ofCorynebacterium glutamicumATCC 13032

Jasmin Schröder, Nina Jochmann, Dmitry A Rodionov, Andreas Tauch

Journal:

Year:

2010

Language:

english

File:

PDF, 3.85 MB

english, 2010

30

Reconstruction of xylose utilization pathway and regulons in Firmicutes

Yang Gu, Yi Ding, Cong Ren, Zhe Sun, Dmitry A Rodionov, Weiwen Zhang, Sheng Yang, Chen Yang, Weihong Jiang

Journal:

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

31

Genomic encyclopedia of sugar utilization pathways in theShewanellagenus

Dmitry A Rodionov, Chen Yang, Xiaoqing Li, Irina A Rodionova, Yanbing Wang, Anna Y Obraztsova, Olga P Zagnitko, Ross Overbeek, Margaret F Romine, Samantha Reed, James K Fredrickson, Kenneth H Nealson,

Journal:

Year:

2010

Language:

english

File:

PDF, 1.55 MB

english, 2010

32

Zn2+-Mediated Structure Formation and Compaction of the “Natively Unfolded” Human Prothymosin α

Vladimir N. Uversky, Joel R. Gillespie, Ian S. Millett, Anna V. Khodyakova, Raisa N. Vasilenko, Anatoly M. Vasiliev, Igor L. Rodionov, Galina D. Kozlovskaya, Dmitry A. Dolgikh, Anthony L. Fink, Sebast

Journal:

Biochemical and Biophysical Research Communications

Year:

2000

Language:

english

File:

PDF, 83 KB

english, 2000

33

Expression and purification of recombinant M-Pol I from Saccharomyces cerevisiae with α-1,6 mannosylpolymerase activity

Dmitry Rodionov, Pedro A. Romero, Albert M. Berghuis, Annette Herscovics

Journal:

Protein Expression and Purification

Year:

2009

Language:

english

File:

PDF, 845 KB

english, 2009

34

Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria

Dmitry A Rodionov, Andrey A Mironov, Mikhail S Gelfand

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 313 KB

english, 2001

35

Tagaturonate–fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima

Irina A. Rodionova, David A. Scott, Nick V. Grishin, Andrei L. Osterman, Dmitry A. Rodionov

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 1.90 MB

english, 2012

36

Negative transcriptional control of biotin metabolism genes by the TetR-type regulator BioQ in biotin-auxotrophic Corynebacterium glutamicum ATCC 13032

Iris Brune, Susanne Götker, Jessica Schneider, Dmitry A. Rodionov, Andreas Tauch

Journal:

Journal of Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

37

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in theShewanellagenus

Dmitry A Rodionov, Pavel S Novichkov, Elena D Stavrovskaya, Irina A Rodionova, Xiaoqing Li, Marat D Kazanov, Dmitry A Ravcheev, Anna V Gerasimova, Alexey E Kazakov, Galina Yu Kovaleva, Elizabeth A Per

Journal:

Year:

2011

Language:

english

File:

PDF, 728 KB

english, 2011

38

Conformationally restricted GABA analogs: from rigid carbocycles to cage hydrocarbons

Levandovskiy, Igor A, Sharapa, Dmitry I, Shamota, Tatyana V, Rodionov, Vladimir N, Shubina, Tatyana E

Journal:

Future Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 2.58 MB

english, 2011

39

Novel inositol catabolic pathway in Thermotoga maritima

Rodionova, Irina A., Leyn, Semen A., Burkart, Michael D., Boucher, Nathalie, Noll, Kenneth M., Osterman, Andrei L., Rodionov, Dmitry A.

Journal:

Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 977 KB

english, 2013

40

[IEEE 2011 36th International Conference on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz 2011) - Houston, TX, USA (2011.10.2-2011.10.7)] 2011 International Conference on Infrared, Millimeter, and Terahertz Waves - Tomography using a high-power terahertz free electron laser

Vlasenko, Maxim G., Pickalov, Valery V., Rodionov, Dmitry G., Knyazev, Boris A.

Year:

2011

Language:

english

File:

PDF, 66 KB

english, 2011

41

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

Michael J Cipriano, Pavel N Novichkov, Alexey E Kazakov, Dmitry A Rodionov…

Journal:

Year:

2013

Language:

english

File:

PDF, 1.13 MB

english, 2013

42

Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Dmitry A Rodionov, Inna Dubchak, Adam Arkin, Eric Alm, Mikhail S Gelfand

Journal:

Year:

2004

Language:

english

File:

PDF, 1.72 MB

english, 2004

43

Structure of the Parallel Duplex of Poly(A) RNA: Evaluation of a 50 Year-Old Prediction

Safaee, Nozhat, Noronha, Anne M., Rodionov, Dmitry, Kozlov, Guennadi, Wilds, Christopher J., Sheldrick, George M., Gehring, Kalle

Journal:

Angewandte Chemie International Edition

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

44

Crystal Structures of the First Condensation Domain of CDA Synthetase Suggest Conformational Changes during the Synthetic Cycle of Nonribosomal Peptide Synthetases

Bloudoff, Kristjan, Rodionov, Dmitry, Schmeing, T. Martin

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.97 MB

english, 2013

45

Polysaccharides utilization in human gut bacteriumBacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

Ravcheev, Dmitry A, Godzik, Adam, Osterman, Andrei L, Rodionov, Dmitry A

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

46

Comparative genomics of metabolic capacities of regulons controlled bycis-regulatory RNA motifs in bacteria

Sun, Eric I, Leyn, Semen A, Kazanov, Marat D, Saier, Milton H, Novichkov, Pavel S, Rodionov, Dmitry A

Journal:

Year:

2013

Language:

english

File:

PDF, 2.13 MB

english, 2013

47

Computational analysis of riboswitch-based regulation

Sun, Eric I., Rodionov, Dmitry A.

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2014

Language:

english

File:

PDF, 354 KB

english, 2014

48

Enhanced characterisation of milk fat globules by their size, shape and refractive index with scanning flow cytometry

Konokhova, Anastasiya I., Rodionov, Andrey A., Gilev, Konstantin V., Mikhaelis, Ilya M., Strokotov, Dmitry I., Moskalensky, Alexander E., Yurkin, Maxim A., Chernyshev, Andrei V., Maltsev, Valeri P.

Journal:

International Dairy Journal

Year:

2014

Language:

english

File:

PDF, 1.80 MB

english, 2014

49

[IEEE 2012 IEEE 14th Int'l Conf. on High Performance Computing and Communication (HPCC) & 2012 IEEE 9th Int'l Conf. on Embedded Software and Systems (ICESS) - Liverpool, United Kingdom (2012.06.25-2012.06.27)] 2012 IEEE 14th International Conference on High Performance Computing and Communication & 2012 IEEE 9th International Conference on Embedded Software and Systems - Scaling the Distributed Stochastic Simulation to Exaflop Supercomputers

Glinsky, Boris, Rodionov, Alexei, Marchenko, Mikhail, Podkorytov, Dmitry, Weins, Dmitry

Year:

2012

Language:

english

File:

PDF, 269 KB

english, 2012

50

Comparative Genomics of DtxR Family Regulons for Metal Homeostasis in Archaea

Leyn, Semen A., Rodionov, Dmitry A., Zhulin, I. B.

Journal:

Journal of Bacteriology

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

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